Publications

Don't forget to cite TRACKTOR's publication if it was useful for your research.

TRACKTOR: robust single-cell trajectory analysis software Mathilde Bernard & Alexandre Deslys, Grégoire Le Lay, Pablo Vargas BiorXiv (preprint), October 2025 https://doi.org/

On this page you will find scientific publications that cite TRACKTOR in the Materials & Methods section.

Adaptive motility enables neutrophils to rapidly navigate confined capillaries Mathieu Deygas, Mathilde Bernard, Pierre Nivoit, Lucie Barbier, Li Wang, Mathieu Maurin, Emmanuel Tejerina, Theresa Jakuszeit, Alexandre Deslys, Moira Garcia-Gomez, Oumaima Baaziz, Serge Garbay, Emmanuel Terriac, Rafaele Attia, Guillaume Duménil, Matthieu Piel, Pablo Vargas bioRxiv, 2025 https://doi.org/10.1101/2025.01.08.631737

Human inherited CCR2 deficiency underlies progressive polycystic lung disease Anna-Lena Neehus, Brenna Carey, Marija Landekic, Patricia Panikulam, Gail Deutsch, Masato Ogishi, Carlos A Arango-Franco, Quentin Philippot, Mohammadreza Modaresi, Iraj Mohammadzadeh, Melissa Corcini Berndt, Darawan Rinchai, Tom Le Voyer, Jérémie Rosain, Mana Momenilandi, Marta Martin-Fernandez, Taushif Khan, Jonathan Bohlen, Ji Eun Han, Alexandre Deslys, Mathilde Bernard, Tania Gajardo-Carrasco, Camille Soudée, Corentin Le Floc'h, Mélanie Migaud, Yoann Seeleuthner, Mi-Sun Jang, Eirini Nikolouli, Simin Seyedpour, Hugues Begueret, Jean-François Emile, Pierre Le Guen, Guido Tavazzi, Costanza Natalia Julia Colombo, Federico Capra Marzani, Micol Angelini, Francesca Trespidi, Stefano Ghirardello, Nasrin Alipour, Anne Molitor, Raphael Carapito, Mohsen Mazloomrezaei, Hassan Rokni-Zadeh, Majid Changi-Ashtiani, Chantal Brouzes, Pablo Vargas, Alessandro Borghesi, Nico Lachmann, Seiamak Bahram, Bruno Crestani, Susanta Pahari, Larry S Schlesinger, Nico Marr, Dusan Bugonovic, Stéphanie Boisson-Dupuis, Vivien Béziat, Laurent Abel, Raphael Borie, Lisa R Young, Robin Deterding, Mohammad Shahrooei, Nima Rezaei, Nima Parvaneh, Daniel Craven, Philippe Gros, Danielle Malo, Fernando E Sepulveda, Lawrence M Nogee, Nathalie Aladjidi, Bruce C Trapnell, Jean-Laurent Casanova, Jacinta Bustamante Cell, January 2024 https://doi.org/10.1016/j.cell.2023.11.036

Actin dynamics regulation by TTC7A/PI4KIIIα limits DNA damage and cell death under confinement Tania Gajardo, Mathilde Bernard, Marie Lô, Elisa Turck, Claire Leveau, Marie-Thérèse El-Daher, Alexandre Deslys, Patricia Panikulam, Constantin Menche, Mathieu Kurowska, Gregoire Le Lay, Lucie Barbier, Despina Moshous, Bénédicte Neven, Henner F Farin, Alain Fischer, Gaël Ménasché, Geneviève de Saint Basile, Pablo Vargas, Fernando E Sepulveda Journal of Allergy and Clinical Immunology, October 2023 https://doi.org/10.1016/j.jaci.2023.06.016

Atypical CXCL12 signaling enhances neutrophil migration by modulating nuclear deformability Bianca Calì, Mathieu Deygas, Fabio Munari, Elisabetta Marcuzzi, Antonino Cassará, Lara Toffali, Massimo Vetralla, Mathilde Bernard, Matthieu Piel, Onelia Gagliano, Marta Mastrogiovanni, Carlo Laudanna, Nicola Elvassore, Barbara Molon, Pablo Vargas, Antonella Viola Science Signaling, November 2022 https://doi.org/10.1126/scisignal.abk2552

The tumor suppressor adenomatous polyposis coli regulates T lymphocyte migration Marta Mastrogiovanni, Pablo Vargas, Thierry Rose, Céline Cuche, Elric Esposito, Marie Juzans, Hélène Laude, Amandine Schneider, Mathilde Bernard, Sophie Goyard, Charlotte Renaudat, Marie-Noëlle Ungeheuer, Jérôme Delon, Andrés Alcover, Vincenzo Di Bartolo Science Advances, April 2022 https://doi.org/10.1126/sciadv.abl5942

HIF2α is a direct regulator of neutrophil motility Sundary Sormendi, Mathieu Deygas, Anupam Sinha, Mathilde Bernard, Anja Krüger, Ioannis Kourtzelis, Gregoire Le Lay, Pablo J. Sáez, Michael Gerlach, Kristin Franke, Ana Meneses, Martin Kräter, Alessandra Palladini, Jochen Guck, Ünal Coskun, Triantafyllos Chavakis, Pablo Vargas, Ben Wielockx Blood, June 2021 https://doi.org/10.1182/blood.2020007505